You can use Bunch and Moom to arrange apps and windows across multiple desktops/spaces.
My morning Bunch opens eight apps across my ten spaces (and does some other things).
This post, from the last linked thread in @sylumer 's prior post explains how.
As far as I know, no window manager can configure windows across spaces. Thus you need to move to a space, open apps and folders, configure, and then move to the next space and repeat, which can be automated.